> For the complete documentation index, see [llms.txt](https://edu.abi.am/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://edu.abi.am/ngs-data-analysis-and-functional-genomics/file-formats-alignment-and-genomic-features.md). # File formats, alignment, and genomic features This module is based the online [Coursera course Command Line Tools for Genomic Data Science offered by Johns Hopkins University](https://www.coursera.org/learn/genomic-tools/home/welcome). In this module, we will explore the primary data formats used in genomic data analysis and learn how to use command-line tools to process and analyze them. ## Course material for genomic data analysis ### On the server The example data materials are stored on our server, we will give a path once you open a user . The files are organized by type and assignment. You need to copy them to your working directory to begin working with them. **Note:** All upcoming file paths will be provided relative to this directory. ### On Zenodo Additionally, the example data materials are stored on Zenodo. You can download them and use them locally on your computer. {% embed url="" %}