> For the complete documentation index, see [llms.txt](https://edu.abi.am/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://edu.abi.am/ngs-data-analysis-and-functional-genomics/genetic-variations-and-variant-calling.md).

# Genetic variations & variant calling

- [Genomic Variations](https://edu.abi.am/ngs-data-analysis-and-functional-genomics/genetic-variations-and-variant-calling/genomic-variations.md)
- [Alignment and variant detection: Practical](https://edu.abi.am/ngs-data-analysis-and-functional-genomics/genetic-variations-and-variant-calling/alignment-and-variant-detection-practical.md)
- [Integrative Genomics Viewer](https://edu.abi.am/ngs-data-analysis-and-functional-genomics/genetic-variations-and-variant-calling/integrative-genomics-viewer.md)
- [Variant Calling with GATK](https://edu.abi.am/ngs-data-analysis-and-functional-genomics/genetic-variations-and-variant-calling/variant-calling-with-gatk.md)